Publications
AI-driven Simulation and Design Lab
Name*: Contributed equally
Name: Corresponding author
Uncovering design and assembly rules for mRNA– DNA origami
*Jack Y. Wang, *Jared Huzar, *Myoungseok Kim, Taeyoung Ryu, Nahtalee R. Lomeli, Derfogail Delcassian, Do-Nyun Kim, and Grigory Tikhomirov
submitted, (2025)
Classifying multi-state DNA origami: an automated approach with minimal labeling and confidence-based filtering
Hongchang Lee, Seo Hyun Kwon, and Do-Nyun Kim
Selecting laminate configurations for training a DeepONet to predict IHD calibration constants in FRP laminates
Seung-Woo Lee, Teubes Christiaan Smit, Do-Nyun Kim, and Robert Grant Reid
Molecular information interchange using multiplexed reconfiguration of DNA origami
*Myoungseok Kim, *Dongsik Seo, Grigory Tikhomirov, and Do-Nyun Kim
De novo design of DNA origami with a generative diffusion model
*Chien Truong-Quoc, *Kyounghwa Jeon, Jinho Kim, Seo Hyun Kwon, Dongsik Seo, Chanseok Lee, and Do-Nyun Kim
SNUPI: A computational framework for rapid mechanical analysis of structured DNA assemblies
Jun Hyeong Park, Do-Nyun Kim, and Jae Young Lee
in revision, (2025)
Harnessing circular hole arrays to reduce the thermal deformation of sandwich composite panels
Hui Sik Kim, Sang Hoon Yoon, Jun Sub Bae, and Do-Nyun Kim
Membrane-targeted DNA frameworks with biodegradability recover cellular function and morphology from frozen cells
*Yedam Lee, *Woo Hyuk Jung, *Kyounghwa Jeon, Eui Bum Choi, Taeyoung Ryu, Chanseok Lee, Do-Nyun Kim, and Dong June Ahn
Trends in Biotechnology, published online, (2025)
A computational framework for investigating the mechanical stresses on breast implants under dynamic loading conditions
Seungkwan Lee, Ju Yeon Park, Sinwoo Park, Jungju Kim, Il-Seok Jang, Ju-Dong Song, and Do-Nyun Kim
Annals of Biomedical Engineering, published online, (2025)
Interpolation Mesh-Graph Net using disconnected spatial graphs of higher order element based meshes
Jozsef Adam Sebestyen and Do-Nyun Kim
Engineering Applications of Artificial Intelligence, 159, Part C: 111535, (2025)
Long-staple design approach towards the scalable production of scaffolded DNA origami
Chanseok Lee, Yanggyun Kim, Kyounghwa Jeon, Taeyoung Ryu, and Do-Nyun Kim
Nanoscale Horizons, 10: 2584-2592, (2025)
An adaptive procedure for the analysis of transient wave propagation using interpolation covers
Jeehwan Lee, Giseok Yun, and Do-Nyun Kim
Computer Methods in Applied Mechanics and Engineering, 445: 118167, (2025)
Nested surrogate model for discrete parameter optimization of structural reliability analysis
Hongseok Kim, Dooyoul Lee, and Do-Nyun Kim
Proceedings of the Institution of Mechanical Engineers, Part O: Journal of Risk and Reliability, 239: 984–999, (2025)
Density-based topology optimization using a deformable mesh
Kyusoon Jung and Do-Nyun Kim
Computers & Structures, 316: 107879, (2025)
Maintenance decision-making model for gas turbine engine component considering the inspection threshold and partial repair
Hongseok Kim, Do-Nyun Kim, and Dooyoul Lee
Engineering Applications of Artificial Intelligence, 156: 111269, (2025)
